Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA

Basic information

species Glycine max
transcript GLYMA04G01840.8
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208329120|gb|GE128416.1|GE128416
EST:     TTCACTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193340893|gb|FK307170.1|FK307170
EST:     GCCCAAACCCCTAAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: GCCCAAA-CCCT-AACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193547162|gb|FK499559.1|FK499559
EST:     CTCTCCTCCCCGACCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTCT-CTCCCCG-CCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|208240700|gb|GE037248.1|GE037248
EST:     TCTCTCCTCCCCGCCCAAACCCTAACTCCCTA-CCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCT-CTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193434275|gb|FK399321.1|FK399321
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193629203|gb|FK578151.1|FK578151
EST:     CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|207785780|gb|GD757879.1|GD757879
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAAAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|207690945|gb|GD671567.1|GD671567
EST:     CTCTCGTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
genomic: CTCTC-TCCCCGCCCAAACCCTAACTCCCTACCCTATTCC-GCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
EST: gi|10233700|gb|BE802588.1|BE802588
EST:     TAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA
                          taaaaactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA