1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA
species | Glycine max |
transcript | GLYMA04G01840.7 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGEST: gi|193340893|gb|FK307170.1|FK307170
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: GCCCAAACCCCTAAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGEST: gi|193547162|gb|FK499559.1|FK499559
genomic: GCCCAAA-CCCT-AACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: CTCTCCTCCCCGACCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGEST: gi|208240700|gb|GE037248.1|GE037248
genomic: CTCT-CTCCCCG-CCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: TCTCTCCTCCCCGCCCAAACCCTAACTCCCTA-CCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGEST: gi|193434275|gb|FK399321.1|FK399321
genomic: TCTCT-CTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGEST: gi|193629203|gb|FK578151.1|FK578151
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGEST: gi|207785780|gb|GD757879.1|GD757879
genomic: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAAAGCCGATGEST: gi|207690945|gb|GD671567.1|GD671567
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: CTCTCGTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATEST: gi|10233700|gb|BE802588.1|BE802588
genomic: CTCTC-TCCCCGCCCAAACCCTAACTCCCTACCCTATTCC-GCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
EST: TAACTCCCTACCCTATTCCGCTTTCTCT CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
cttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA
taaaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA