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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA

Basic information

species Glycine max
transcript GLYMA04G01840.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208329120|gb|GE128416.1|GE128416
EST:     TTCACTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|15286929|gb|BI470820.1|BI470820
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298177433|gb|HO023566.1|HO023566
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298166994|gb|HO010433.1|HO010433
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298194732|gb|HO043204.1|HO043204
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298182978|gb|HO028241.1|HO028241
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193340893|gb|FK307170.1|FK307170
EST:     GCCCAAACCCCTAAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: GCCCAAA-CCCT-AACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|6719385|gb|AW307032.1|AW307032
EST:     CTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193547162|gb|FK499559.1|FK499559
EST:     CTCTCCTCCCCGACCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTCT-CTCCCCG-CCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|9204976|gb|BE331200.1|BE331200
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|4313697|gb|AI460816.1|AI460816
EST:     CCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|10847152|gb|BF069891.1|BF069891
EST:     CTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7691340|gb|AW759398.1|AW759398
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|15287780|gb|BI471671.1|BI471671
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|11688737|gb|BF596413.1|BF596413
EST:     CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|5760619|gb|AI965982.1|AI965982
EST:     TCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|8669419|gb|BE190526.1|BE190526
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|13240357|gb|BG359666.1|BG359666
EST:     CCCGCCCAAACCCTAACT-CCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|22523779|gb|BU082590.1|BU082590
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|11413010|gb|BF425030.1|BF425030
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7693251|gb|AW761346.1|AW761346
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|18040463|gb|BM308757.1|BM308757
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7693215|gb|AW761311.1|AW761311
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7285599|gb|AW598086.1|AW598086
EST:     TCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|8283940|gb|BE021499.1|BE021499
EST:     CCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7795256|gb|AW780653.1|AW780653
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298174909|gb|HO014826.1|HO014826
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|6566916|gb|AW234548.1|AW234548
EST:     CTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|208240700|gb|GE037248.1|GE037248
EST:     TCTCTCCTCCCCGCCCAAACCCTAACTCCCTA-CCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCT-CTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|19348267|gb|BM892799.1|BM892799
EST:     CCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|4290670|gb|AI437510.1|AI437510
EST:     CCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193434275|gb|FK399321.1|FK399321
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|15814324|gb|BI786599.1|BI786599
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|19937168|gb|BQ081178.1|BQ081178
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298169819|gb|HO018443.1|HO018443
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGGCCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|4313668|gb|AI460787.1|AI460787
EST:     CCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|11413358|gb|BF425369.1|BF425369
EST:     AAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: AAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|4396967|gb|AI495964.1|AI495964
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|254326788|gb|GR836397.1|GR836397
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7283486|gb|AW596093.1|AW596093
EST:     TACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193629203|gb|FK578151.1|FK578151
EST:     CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|6481452|gb|AW200723.1|AW200723
EST:     TCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|16347525|gb|BI973120.1|BI973120
EST:     CTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|9565316|gb|BE474825.1|BE474825
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|11687730|gb|BF595406.1|BF595406
EST:     CAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298194939|gb|HO043411.1|HO043411
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|7041959|gb|AW471853.1|AW471853
EST:     CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|13312516|gb|BG406167.1|BG406167
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|20207566|gb|BQ133655.1|BQ133655
EST:     TAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298197229|gb|HO041972.1|HO041972
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|192328172|gb|FK022866.1|FK022866
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298189527|gb|HO037930.1|HO037930
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|207785780|gb|GD757879.1|GD757879
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAAAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|14259807|gb|BG882715.1|BG882715
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|207690945|gb|GD671567.1|GD671567
EST:     CTCTCGTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
genomic: CTCTC-TCCCCGCCCAAACCCTAACTCCCTACCCTATTCC-GCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
EST: gi|19346952|gb|BM891832.1|BM891832
EST:     CCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298190508|gb|HO032629.1|HO032629
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|15199758|gb|BI423995.1|BI423995
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|298197186|gb|HO041929.1|HO041929
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|308098052|gb|HO761223.1|HO761223
EST:     CAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|10842858|gb|BF066207.1|BF066207
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|4396479|gb|AI495476.1|AI495476
EST:     TCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|14258761|gb|BG881669.1|BG881669
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|10233700|gb|BE802588.1|BE802588
EST:     TAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA
                          taaaaactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA