Sequence
atgc intronic sequence ATGC exonic sequence...atgataagcatatttataatctcgaacatttttccatgccctggattcaacaagtgtagtgttaatgttaattactaattaatgttgtgtgaggaagcagATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTA
Basic information
species | Glycine max |
transcript | GLYMA04G01650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G01650.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0122g00800.t01 (Vitis vinifera), 3'ss of exon 1
-----atgataagcatatttataatctcgaacattt-ttccatgccctggattcaacaagtgtagtgttaatgttaattactaattaatgttgtgtgaggaagcagATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTA
| | || | || |||| || || || | ||| | || |||||| | | | | | ||||| | |||||||| ||||||||||| || ||||| |||||| | ||||| || ||||||||||| |||||||| || | ||||||||||| ||||| |||||||||||
tagaatttgtgagggaaagaggaaagaaaaacaacagttgggtgtagcagaaactacatat-taacattaatgctcgtga-tgggtggaattgtg----gttgcagATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaacaagtgtagtgttaatgttaattactaattaatgttgtgtgaggaagcagATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTA
tagtgttaatgttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgataagcatatttataatctcgaacatttttccatgccctggattcaacaagtgtagtgttaatgttaattactaattaatgttgtgtgaggaagcagATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - catgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg