1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagtccctcttccttaactgttgtgacaccacaatcttgtggtttgattgattgattgattgattctggattttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTTCGAGAACTCCGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAAAA
species | Glycine max |
transcript | GLYMA04G01220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTEST: gi|151406570|gb|EV276385.1|EV276385
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgagtccct ... attttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTEST: gi|209712291|gb|BW668485.1|BW668485
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgagtccct ... attttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACT
EST: AACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTEST: gi|209728326|gb|BW658538.1|BW658538
genomic: AACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgagtccct ... attttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTEST: gi|254346081|gb|GR859694.1|GR859694
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgagtccct ... attttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgagtccct ... attttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACT
gacaccacaatcttgtggtttgattgattgattgattgattctggattttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTTCGAGAACTCCGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAAAA
gattgat putative branch site (score: 4)
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtccctcttccttaactgttgtgacaccacaatcttgtggtttgattgattgattgattgattctggattttggcagGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTTCGAGAACTCCGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA