Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151396466|gb|EV266343.1|EV266343EST: GATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAAT GCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAA
genomic: GATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATgtaaccttcc ... acaattccagGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAA
EST:
gi|193536293|gb|FK489155.1|FK489155EST: ATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTTCCACCGAAT GCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAG
genomic: ATTGTCATGTATGCTTATTTCAAGAAGCTCGATTAC-TTTTCCACCGAATgtaaccttcc ... acaattccagGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAG
EST:
gi|11687605|gb|BF595281.1|BF595281EST: GATTGTCATGTATGCTTATTTCAGGAAGCTCGATTACTTTTTCAACGAAT GCATTTACTCGTC-TAATGCA
genomic: GATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATgtaaccttcc ... acaattccagGCATTTACTC-TCCTAATGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttattttcccctctaactgccaaacaaacatttcactctctctacaattccagGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGATTATCCAATTTGCTTGCTTTCTTGTA
ctctaac putative branch site (score: 2)
tttcactctctctac putative PPT
aaacattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaccttcctttcttttcctcttattttcccctctaactgccaaacaaacatttcactctctctacaattccagGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGATTATCCAATTTGCTTGCTTTCTTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT