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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagattcatttccaaacctattcgattctattagattattgctactatatctcaatcaatcaaccaattcccttctgtctgtgactgtgctatatgatggatcatcgatttaatttaccctaatattattattgatccaaataacagAACAGGTCAGGTACACTGTGTGATTGAGTGAGTGGTCAATGAACTACCGCAGCAACATTCTCATCCAATTGTTTTCCTCGCCTCCTGCATGGGCAACTCT

Basic information

species Glycine max
transcript GLYMA04G00250.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182933|gb|HO028146.1|HO028146
EST:     TTGCTTCTTGTTTCTTCTTCTTCGCCAGACGATCCAGACTGACAGATAAG                         AACAGGTCAGGTACACTGTGTGATTGAGTGAGTGGTCAATGAACTACCGCA
genomic: TTGCTTCTTGTTTCTTCTTCTTCACCAGACGATCCAGACTGACAGATAAGgttaagattc ... caaataacagAACAGGTCAGGTACACTGTGTGATTGAGTGAGTGGTCAATGAACTACCGCA
EST: gi|19271179|gb|BM887435.1|BM887435
EST:     TTGCTTCTTGTTTCTTCTTCTTCACCAGACGATCCAGACTGACAGATAAG                         AACAGGTCAGGTACACTGTGTGATTGAGTGAGTGGTCAATGAACTACCGCA
genomic: TTGCTTCTTGTTTCTTCTTCTTCACCAGACGATCCAGACTGACAGATAAGgttaagattc ... caaataacagAACAGGTCAGGTACACTGTGTGATTGAGTGAGTGGTCAATGAACTACCGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgatggatcatcgatttaatttaccctaatattattattgatccaaataacagAACAGGTCAGGTACACTGTGTGATTGAGTGAGTGGTCAATGAACTACCGCAGCAACATTCTCATCCAATTGTTTTCCTCGCCTCCTGCATGGGCAACTCT
                                     tattgat  putative branch site (score: 3)
               atttaatttaccctaa  TA-rich tract