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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccgcccaattctcttcattttttttctaatcaatatttagtgattgttggtgaagcaaatctccagttttgattttagtatctaatgttgtaaatttataatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTG

Basic information

species Glycine max
transcript GLYMA03G41760.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724712|gb|AW309045.1|AW309045
EST:     CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCC                         GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
genomic: CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCgtaagttccg ... aatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
EST: gi|7925867|gb|AW831893.1|AW831893
EST:     CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCC                         GAAAATTCAAAAGTATCAGGAANATTCGTCTCAGCGCCATTATACT
genomic: CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCgtaagttccg ... aatggattagGAAAATTCAAAAGTATCAGGAA-ATTCGTCTCAGCGCCATTATACT
EST: gi|298196953|gb|HO041696.1|HO041696
EST:     CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCC                         GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
genomic: CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCgtaagttccg ... aatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
EST: gi|192307067|gb|FK002705.1|FK002705
EST:     CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCC                         GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
genomic: CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCgtaagttccg ... aatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
EST: gi|298169270|gb|HO020630.1|HO020630
EST:     CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCC                         GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
genomic: CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCgtaagttccg ... aatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
EST: gi|298176670|gb|HO026791.1|HO026791
EST:     CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCC                         GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT
genomic: CTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCgtaagttccg ... aatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaatctccagttttgattttagtatctaatgttgtaaatttataatggattagGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTG
                         atctaat  putative branch site (score: 3)
            ttttgattttagtatc  TA-rich tract