Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaaaaatcaaacacaccctcactcataataataacatcaactaattcattcttctctccttccttctttctagATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATATCGCCCTCAAGAATGACGACGCCACTACCACCACCACCAGCAGCAGCGC

Basic information

species Glycine max
transcript GLYMA03G41050.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233740|gb|AW569084.1|AW569084
EST:     CTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAG                         ATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATA
genomic: CTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGgtataaaaaa ... ttctttctagATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATA
EST: gi|24135703|gb|BU926213.1|BU926213
EST:     CTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAG                         ATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATA
genomic: CTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGgtataaaaaa ... ttctttctagATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATA
EST: gi|209710153|gb|BW658902.1|BW658902
EST:     CTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACTACAG                         ATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATA
genomic: CTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGgtataaaaaa ... ttctttctagATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactcataataataacatcaactaattcattcttctctccttccttctttctagATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATATCGCCCTCAAGAATGACGACGCCACTACCACCACCACCAGCAGCAGCGC
                  tcaactaattcattct  CT-rich tract
      ataataataacatcaa  TA-rich tract