1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccctcccttttacctgattacttttcacagcattatatgatattatgatgatgttgatcctttaatttgtttaacattttacccctcgttttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGA
species | Glycine max |
transcript | GLYMA03G40930.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAACAACGTCACCACTGATCACATTCAGCAG TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATEST: gi|208159230|gb|GD953817.1|GD953817
genomic: CCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: TGATGGCAGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATEST: gi|208287799|gb|GE081334.1|GE081334
genomic: TGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: TGATGGCAGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATEST: gi|193419354|gb|FK385314.1|FK385314
genomic: TGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: TGATGGCAGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATEST: gi|193584554|gb|FK538980.1|FK538980
genomic: TGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: CCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
genomic: CCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
tgatgatgttgatcctttaatttgtttaacattttacccctcgttttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGA
gtttaac putative branch site (score: 3)
ttttacccctcgtttt CT-rich tract
tttaatttgtttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctcccttttacctgattacttttcacagcattatatgatattatgatgatgttgatcctttaatttgtttaacattttacccctcgttttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT