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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattaactacattacttgctcttattttgataattgatacaattaatctcattctaggtttcaaaattgggattcggatgtatgggccttactggagcgtacaatgaccctctccaagaacagGATGGCATATCTGTTATCAAGTATGCGTTCAGTAAGGGAATCACATTTTTTGATACTGCGGATGTTTATGGAGCCAATGCTAATGAACTTTTGGTTGGAA

Basic information

species Glycine max
transcript GLYMA03G40860.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40860.3 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 1
----------------------------------------gtactattaactacattacttgctcttattttgataattgatacaattaatctcattctaggtttcaaaattgggattcggatgtatgggccttactggagcgtacaatgaccctctccaagaacagGATGGCATATCTGTTATCAAGTATGCGTTCAGTAAGGGAATCACATTTTTTGATACTGCGGATGTTTATGGAGCCAATGCTAATGAACTTTTGGTTGGAA
                                          | ||  |  |  |||  |     ||| |||| |||||| ||     | |     |  |||| |||||||| ||||| |||||||||||||| |||||||| |||||    ||||||   ||  |||||||||| ||  | |||||| |||| ||||  |                                                                  
aaggaattttctattggttttttttttttttctttttcaaaaagtagaatttctatttttccagattaatttg-taattgctatttacatttgttctacagGTCTCAAAATTAGGATTTGGATGTATGGGCCTGACTGGAGCCTACAACTCTCCTCTCTCTGATGAGGATGGCATTTCAATAATCAAGGATGCCTTCAACA------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301004|gb|FG990104.1|FG990104
EST:     TGGCTCAAGCCCAGATTCAACTAGTTAAACTTGGAACCCAAGGCTTTGAG                         GATGGCATATCTGTTATCAAGTATGCGTTCAGTAAGGGAATCACATTTTTT
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ccaagaacagGATGGCATATCTGTTATCAAGTATGCGTTCAGTAAGGGAATCACATTTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggattcggatgtatgggccttactggagcgtacaatgaccctctccaagaacagGATGGCATATCTGTTATCAAGTATGCGTTCAGTAAGGGAATCACATTTTTTGATACTGCGGATGTTTATGGAGCCAATGCTAATGAACTTTTGGTTGGAA
                 gccttac  putative branch site (score: 3)
                                       ccctctcc  putative PPT