Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattaactacattacttgctcttattttgataattgatacaattaatctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGACCCTCTCCAAGAACAGGATGGCATATCTGTTATCAAGTATGCGTTCAGTA

Basic information

species Glycine max
transcript GLYMA03G40860.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40860.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 1
----------------------------------------gtactattaactacattacttgctcttattttgataattgatacaattaatctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGACCCTCTCCAAGAACAGGATGGCATATCTGTTATCAAGTATGCGTTCAGTA
                                          | ||  |  |  |||  |     ||| |||| |||||| ||     | |     |  |||| |||||||| ||||| |||||||||||||| |||||||| |||||    ||||||   ||  |||||||||| ||  | |||||| |||| ||||  |
aaggaattttctattggttttttttttttttctttttcaaaaagtagaatttctatttttccagattaatttg-taattgctatttacatttgttctacagGTCTCAAAATTAGGATTTGGATGTATGGGCCTGACTGGAGCCTACAACTCTCCTCTCTCTGATGAGGATGGCATTTCAATAATCAAGGATGCCTTCAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328403|gb|GR835368.1|GR835368
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|208269913|gb|GE071747.1|GE071747
EST:     TGACTCAAGCCCAGATTCAACCAGTCAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|193450752|gb|FK413054.1|FK413054
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACA
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACA
EST: gi|213617996|gb|DB963629.1|DB963629
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|213616562|gb|DB967198.1|DB967198
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|208264527|gb|GE064967.1|GE064967
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|208255645|gb|GE056070.1|GE056070
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|10847755|gb|BF070391.1|BF070391
EST:     GTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: GTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209703783|gb|BW656888.1|BW656888
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|213592927|gb|DB966032.1|DB966032
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254347025|gb|GR856695.1|GR856695
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254327803|gb|GR834768.1|GR834768
EST:     CCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: CCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|61241644|gb|DN591035.1|DN591035
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|4285225|gb|AI440870.1|AI440870
EST:     TCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|151398527|gb|EV268398.1|EV268398
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209706172|gb|BW680889.1|BW680889
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209722898|gb|BW682931.1|BW682931
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209702300|gb|BW664256.1|BW664256
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|192325064|gb|FK016175.1|FK016175
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|208267083|gb|GE062394.1|GE062394
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|9987127|gb|BE661235.1|BE661235
EST:     GATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: GATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|15663416|gb|BI700787.1|BI700787
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|213596943|gb|DB958095.1|DB958095
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254337008|gb|GR843187.1|GR843187
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209703421|gb|BW678236.1|BW678236
EST:     TGACTAAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|208301002|gb|GE097323.1|GE097323
EST:     TGACTAAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|192305622|gb|FG994332.1|FG994332
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209699381|gb|BW664100.1|BW664100
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGC-TTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|15813849|gb|BI786124.1|BI786124
EST:     CTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: CTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|192294676|gb|FG986525.1|FG986525
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGGTTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254323788|gb|GR836127.1|GR836127
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|298180988|gb|HO022427.1|HO022427
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|192309505|gb|FK002869.1|FK002869
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254347733|gb|GR853982.1|GR853982
EST:     GTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: GTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|213596960|gb|DB964139.1|DB964139
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGC-TTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|213587182|gb|DB955474.1|DB955474
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|213608458|gb|DB970887.1|DB970887
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|209712723|gb|BW681577.1|BW681577
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|19453671|gb|BM955081.1|BM955081
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|16996142|gb|BM085514.1|BM085514
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254332024|gb|GR846227.1|GR846227
EST:     TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|192306323|gb|FG995103.1|FG995103
EST:     TGACTCAAGCCCAGATTCAACCAGTTTAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: TGACTCAAGCCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
EST: gi|254320499|gb|GR826948.1|GR826948
EST:     CCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAG                         GTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC
genomic: CCCAGATTCAACCAGTTAAACTTGGAACCCAAGGCTTTGAGgtactattaa ... ctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactacattacttgctcttattttgataattgatacaattaatctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGACCCTCTCCAAGAACAGGATGGCATATCTGTTATCAAGTATGCGTTCAGTA
                                            tctcattct  CT-rich tract
                 tcttattttgataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactattaactacattacttgctcttattttgataattgatacaattaatctcattctagGTTTCAAAATTGGGATTCGGATGTATGGGCCTTACTGGAGCGTACAATGACCCTCTCCAAGAACAGGATGGCATATCTGTTATCAAGTATGCGTTCAGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG