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...gtctggttcttccttaaaaacagtaacttgcatgatggaattgttgtttctggttatattttatgcgtttcggactaattcattcatgagggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCTTGAGAGGGAACCCTACTGGCCCTCAGAAAAGCTCAGAATTTCCATCACT
species | Glycine max |
transcript | GLYMA03G40720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAG CATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCTEST: gi|213602891|gb|DB972465.1|DB972465
genomic: CCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAGgtatcccctc ... ggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCT
EST: CCTCCCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAG CATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCTEST: gi|213616469|gb|DB965530.1|DB965530
genomic: CCT-CCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAGgtatcccctc ... ggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCT
EST: CCTCCCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAG CATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCTEST: gi|22540703|gb|BU090546.1|BU090546
genomic: CCT-CCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAGgtatcccctc ... ggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCT
EST: CCCTCCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAG CATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCT
genomic: CCCTCCATTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAGgtatcccctc ... ggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCT
gtttctggttatattttatgcgtttcggactaattcattcatgagggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCTTGAGAGGGAACCCTACTGGCCCTCAGAAAAGCTCAGAATTTCCATCACT
gactaat putative branch site (score: 2)
tggttatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggttcttccttaaaaacagtaacttgcatgatggaattgttgtttctggttatattttatgcgtttcggactaattcattcatgagggatgtgcagCATGGGAATTTCTGGAACAACAGACTATGGATCATTCACATACCAAAACCTTGAGAGGGAACCCTACTGGCCCTCAGAAAAGCTCAGAATTTCCATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - ttcttcc
- - - - - - - -aaaaaca
- - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat