1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttctaatgctcgtatctagtttactaggattttctataccttgacttgagctagagtggtgagtgaatatatgctttatttgatttttggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTGTTCACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTT
species | Glycine max |
transcript | GLYMA03G40260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAG GCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTEST: gi|254325386|gb|GR838267.1|GR838267
genomic: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAGgttcgttttc ... ggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTT
EST: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAG GCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTGEST: gi|151408278|gb|EV278086.1|EV278086
genomic: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAGgttcgttttc ... ggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTG
EST: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAG GCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTGEST: gi|192294572|gb|FG986421.1|FG986421
genomic: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAGgttcgttttc ... ggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTG
EST: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAG GCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTGEST: gi|7640336|gb|AW734640.1|AW734640
genomic: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAGgttcgttttc ... ggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTG
EST: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAG GCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTG
genomic: TTTGCCTCTGGCTCATTACTCTGCTCAATCTCGCTTGGTGCTTTCTCCAGgttcgttttc ... ggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTG
acttgagctagagtggtgagtgaatatatgctttatttgatttttggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTGTTCACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTT
aatatatgctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctaatgctcgtatctagtttactaggattttctataccttgacttgagctagagtggtgagtgaatatatgctttatttgatttttggtgactcagGCATGGGAGTGCACGTCTGGGAGAAAGTTGACATGGAACCTGTTATCCTTGTTCACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - aatgctc
- - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggtg