1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...attaattgaaatcgagctttgttattgacgcgattacctgaaaatcctgtttctgataatggtgtttccatttccatgcttatatccgtgtgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATG
species | Glycine max |
transcript | GLYMA03G40000.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAEST: gi|213615160|gb|DB964968.1|DB964968
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAEST: gi|192301788|gb|FG997674.1|FG997674
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAEST: gi|213614510|gb|DB969115.1|DB969115
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAEST: gi|46492660|gb|CN472216.1|CN472216
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAEST: gi|298170197|gb|HO018821.1|HO018821
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAEST: gi|151396136|gb|EV266013.1|EV266013
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTCTTCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
cctgtttctgataatggtgtttccatttccatgcttatatccgtgtgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATG
ttctgat putative branch site (score: 3)
ttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaattgaaatcgagctttgttattgacgcgattacctgaaaatcctgtttctgataatggtgtttccatttccatgcttatatccgtgtgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT