1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgttttactggaatcaattttataataagttgatagctgcatctgcatggcatcgtgtcatattgctatccttcttattatattctttatattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGATTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGCCGATC
species | Glycine max |
transcript | GLYMA03G39490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCG ATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTEST: gi|192293828|gb|FG986037.1|FG986037
genomic: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCGgtatctattg ... tattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
EST: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCG ATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTEST: gi|120533443|gb|EH261576.1|EH261576
genomic: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCGgtatctattg ... tattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
EST: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCG ATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
genomic: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCGgtatctattg ... tattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
gcatggcatcgtgtcatattgctatccttcttattatattctttatattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGATTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGCCGATC
ttctttat CT-rich tract
tatccttcttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttactggaatcaattttataataagttgatagctgcatctgcatggcatcgtgtcatattgctatccttcttattatattctttatattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGATTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGCCGATC
- - -ttactgg
- - - - - - - - - - - - - - - - - tagctgc
- - - - - - - - - - - - - - - - - - - - - - -gcatggc