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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttcagtacagtgcccaattatccattatagttaccttagctgctttgtttttattcctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcagAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACT

Basic information

species Glycine max
transcript GLYMA03G38800.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38800.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g00460.t01 (Vitis vinifera), 3'ss of exon 2
gtgagcttcagtacagtgcccaattatccattatagttaccttagctgctttgtttttattcctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcagAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACT
||||| || |  |||  || |  || |   ||     |   |||     ||  | |||||||||||   |      |||  ||| | || |||| ||||  || || | ||  ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| || |||||||| ||| | || || |||||||| || || 
gtgagtttaa--acatcgctccgttgtgt-ttccgactttgtta-tgatttcttatttattcctctggtg----agttcttctagagtttaacttctaaacttattttctt--cagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcagAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACT
                  ggctaaa  putative branch site (score: 3)
                                       ttttttgtttt  putative PPT
                                   taagttttttgtttta  TA-rich tract