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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattcatcactcctctaattttttctccctagctagctctctctctctctctctctcctagtaggtgtgattaattacttcggcttcattaattatttcttgcagGTTATGGTATGGAATGCAGTGGCTTCATGAGAG

Basic information

species Glycine max
transcript GLYMA03G37290.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37290.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G62860.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgaattcatcactcctctaattttttctccctagctagctctctctctctctctctctcctagtaggt-------gtgattaattacttcggcttcattaattatttct-----tgcagGTTATGGTATGGAATGCAGTGGCTTCATGAGAG
|| |   || |  | ||   |    || |    | | |  | | | |   | | |||    || | | |          |  || |           | |||  |||  |     |||||||||||| ||||| |||||| ||||||||||||
gtaacaccaactatactaatagaagttttattaatccaattttatttgcttttttctgatttacttgattcacaaaacaaaaaaatctcctaataataataagaattggtcaatgtgcagGTTATGGAATGGAGTGCAGTAGCTTCATGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctcctagtaggtgtgattaattacttcggcttcattaattatttcttgcagGTTATGGTATGGAATGCAGTGGCTTCATGAGAG
                                    cattaat  putative branch site (score: 3)
                                          ttatttctt  CT-rich tract
                                  ttcattaattatttct  TA-rich tract