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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacctcttcttctccaaacctcattctcttcaaacgctaacgtttaatttttaagcggagtgggattccactttccccgagtgatcatagaatccgaagctctagggttaccgttactgttaaattaacctaacattgtatattaattttacctttttaaccccattctccgtttactccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG

Basic information

species Glycine max
transcript GLYMA03G37170.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtacctcttcttctccaaacctcattctcttcaaacgctaacgtttaatttttaagcggagtgggattccactttccccgagtgatcatagaatccgaagctctagggttaccgttactgttaaattaacctaacattgtatattaattttacctttttaaccccattctccgtttactccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
                                                                              | | | | |   ||  |||| |     | ||||||||  |||     || | ||  |||   || ||| || ||||     | ||    | ||||     || |   || |||||||||||||| || ||||||||||| ||||| |||||||||
-----------------------------------------------------------------------------gtacgcta-tacccactgaattcag---tttagggttagggtttggtgtacagta-tcta--tttatatcttcatttatttgtgttttaacgattcagttgtttcgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4306331|gb|AI443889.1|AI443889
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|192311359|gb|FK003802.1|FK003802
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|208242573|gb|GE043363.1|GE043363
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCC
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCC
EST: gi|298177163|gb|HO027058.1|HO027058
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|192311360|gb|FK003803.1|FK003803
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacattgtatattaattttacctttttaaccccattctccgtttactccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
                       ttttaac  putative branch site (score: 2)
                             ccccattctccgttta  CT-rich tract
     tgtatattaattttac  TA-rich tract