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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacctcttcttctccaaacctcattctcttcaaacgctaacgtttaatttttaagcggagtgggattccactttccccgagtgatcatagaatccgaagctctagggttaccgttactgttaaattaacctaacattgtatattaattttacctttttaaccccattctccgtttactccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG

Basic information

species Glycine max
transcript GLYMA03G37170.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtacctcttcttctccaaacctcattctcttcaaacgctaacgtttaatttttaagcggagtgggattccactttccccgagtgatcatagaatccgaagctctagggttaccgttactgttaaattaacctaacattgtatattaattttacctttttaaccccattctccgtttactccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
                                                                              | | | | |   ||  |||| |     | ||||||||  |||     || | ||  |||   || ||| || ||||     | ||    | ||||     || |   || |||||||||||||| || ||||||||||| ||||| |||||||||
-----------------------------------------------------------------------------gtacgcta-tacccactgaattcag---tttagggttagggtttggtgtacagta-tcta--tttatatcttcatttatttgtgttttaacgattcagttgtttcgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181980|gb|HO026155.1|HO026155
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|4306331|gb|AI443889.1|AI443889
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298177576|gb|HO027243.1|HO027243
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|15285536|gb|BI469427.1|BI469427
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|20449577|gb|BQ253701.1|BQ253701
EST:     GACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: GACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298188838|gb|HO035531.1|HO035531
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACGTG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298167205|gb|HO010644.1|HO010644
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         TTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|15287452|gb|BI471343.1|BI471343
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|20449634|gb|BQ253758.1|BQ253758
EST:     GACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: GACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|6227965|gb|AW156627.1|AW156627
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298165378|gb|HO011427.1|HO011427
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|12773301|gb|BG238228.1|BG238228
EST:     GCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: GCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298181583|gb|HO025758.1|HO025758
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|208242573|gb|GE043363.1|GE043363
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCC
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCC
EST: gi|298177163|gb|HO027058.1|HO027058
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298169719|gb|HO021079.1|HO021079
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298190031|gb|HO032152.1|HO032152
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298180399|gb|HO025600.1|HO025600
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298195412|gb|HO039243.1|HO039243
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|6724523|gb|AW308922.1|AW308922
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|24206235|gb|BU965488.1|BU965488
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacattgtatattaattttacctttttaaccccattctccgtttactccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
                       ttttaac  putative branch site (score: 2)
                             ccccattctccgttta  CT-rich tract
     tgtatattaattttac  TA-rich tract