Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccataattccaatctcgtattctcggacattactattgttctcgagcgtgcgccacttgtctcgcttcttccaaccctaattttccgtttcgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAAAGGACGTTACCCGGG

Basic information

species Glycine max
transcript GLYMA03G36650.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326562|gb|FK017279.1|FK017279
EST:     CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGCG                         GTTGTCGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
genomic: CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataat ... cgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
EST: gi|298175595|gb|HO018306.1|HO018306
EST:     CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAG                         GTTGTTGCTTCGTAACTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
genomic: CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataat ... cgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
EST: gi|298167101|gb|HO010540.1|HO010540
EST:     CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAG                         GTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
genomic: CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataat ... cgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtgcgccacttgtctcgcttcttccaaccctaattttccgtttcgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAAAGGACGTTACCCGGG
                             ccctaat  putative branch site (score: 3)
                                   ttttccgtttcgcctc  CT-rich tract
                                taatttt  TA-rich tract