1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgggtttggggttcatgtattttttctttcctaaacctcatctagcaagattatatatcttcatccatatgctaatctgattttctatcatcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGCGTCCCCACTATTCTACTGCTAATGCAAGATCGATTA
species | Glycine max |
transcript | GLYMA03G36630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAG TGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTC
genomic: CTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGgtactatttc ... tcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTC
caagattatatatcttcatccatatgctaatctgattttctatcatcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGCGTCCCCACTATTCTACTGCTAATGCAAGATCGATTA
ttatatatcttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtttggggttcatgtattttttctttcctaaacctcatctagcaagattatatatcttcatccatatgctaatctgattttctatcatcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGCGTCCCCACTATTCTACTGCTAATGCAAGATCGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
-gggtttg
- - - - - - -catgtat
- - - - - - - - - - - - - - - ctaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcta