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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttccctcactctcgcagatgtgcatttctgtttcattttcattaggatctccattttcccttaattttcatccataagatttaagacttattagaagcaattacattcctaatattttttgtcttcctggaccagGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCTTGCCAAACCTAGAAGGCGTGCTAATTTTCGGTTATGCAATGTGTCATG

Basic information

species Glycine max
transcript GLYMA03G35830.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314238|gb|FK006976.1|FK006976
EST:     CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAG                         GTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
genomic: CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAGgtaccttccc ... cctggaccagGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
EST: gi|192314239|gb|FK006977.1|FK006977
EST:     CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAG                         GTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
genomic: CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAGgtaccttccc ... cctggaccagGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
EST: gi|6134681|gb|AW133074.1|AW133074
EST:     CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAG                         GTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
genomic: CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAGgtaccttccc ... cctggaccagGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
EST: gi|151395111|gb|EV264982.1|EV264982
EST:     CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAG                         GTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT
genomic: CGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAGgtaccttccc ... cctggaccagGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagacttattagaagcaattacattcctaatattttttgtcttcctggaccagGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCTTGCCAAACCTAGAAGGCGTGCTAATTTTCGGTTATGCAATGTGTCATG
                          tcctaat  putative branch site (score: 2)
                                tattttttgtcttcct  CT-rich tract
                  aattacattcctaata  TA-rich tract