1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagtgtttctctcactttccacttcaattttattttaattttagttttatttttaattttccatgttcttctacattcgctgcgtattgatctgcaattgtctttttttgttttggggattcggcagGTACATGGACAAGAAGCTTCAGA
species | Glycine max |
transcript | GLYMA03G35490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTCCTCACAATGAGCAGATCAGGGCAAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|254319446|gb|GR830697.1|GR830697
genomic: CTCTTCTCCTCACAATGAGCAGATCAGGGC-AACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208264145|gb|GE062529.1|GE062529
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|192333496|gb|FK024025.1|FK024025
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208053735|gb|GD853060.1|GD853060
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTCGAAGAA GTACATGGACAAGEST: gi|10255304|gb|BE823070.1|BE823070
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAG
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|7041610|gb|AW471504.1|AW471504
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|192296352|gb|FG991590.1|FG991590
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|14126515|gb|BG790953.1|BG790953
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|9901050|gb|BE610018.1|BE610018
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193501077|gb|FK464608.1|FK464608
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGEST: gi|207692585|gb|GD674838.1|GD674838
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAG
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193657862|gb|FK601497.1|FK601497
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151409296|gb|EV279104.1|EV279104
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193357009|gb|FK323537.1|FK323537
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208023507|gb|GD821178.1|GD821178
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193493544|gb|FK460994.1|FK460994
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|16347640|gb|BI973235.1|BI973235
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|7028229|gb|AW458012.1|AW458012
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151393472|gb|EV263347.1|EV263347
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193321395|gb|FK285223.1|FK285223
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCCCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|26059780|gb|CA802694.1|CA802694
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193397176|gb|FK363280.1|FK363280
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208168402|gb|GD966922.1|GD966922
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: CCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|19268867|gb|BM885123.1|BM885123
genomic: CCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|213618034|gb|DB963667.1|DB963667
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208152583|gb|GD946566.1|GD946566
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|31468284|gb|CD410312.1|CD410312
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|192309180|gb|FG999099.1|FG999099
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|192333495|gb|FK024024.1|FK024024
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193691028|gb|FK632757.1|FK632757
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|14258516|gb|BG881424.1|BG881424
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|14990669|gb|BI316342.1|BI316342
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|19269146|gb|BM885402.1|BM885402
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208096942|gb|GD894217.1|GD894217
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|192328013|gb|FK021759.1|FK021759
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151404612|gb|EV274426.1|EV274426
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193698140|gb|FK636691.1|FK636691
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|10252902|gb|BE820668.1|BE820668
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208269010|gb|GE068605.1|GE068605
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCATCCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151409574|gb|EV279382.1|EV279382
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAGTGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|213593675|gb|DB971697.1|DB971697
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208308758|gb|GE104580.1|GE104580
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|207800148|gb|GD771121.1|GD771121
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCAGGGCAACCACCGGATTTGAAGAA GTACATGGATAAGAAGCTTCAGAEST: gi|193661550|gb|FK604478.1|FK604478
genomic: TCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193612302|gb|FK560933.1|FK560933
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAGGAA GTACATGGACAAGGAGCTTCAGAEST: gi|298184568|gb|HO029781.1|HO029781
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|19269379|gb|BM885635.1|BM885635
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193572056|gb|FK529605.1|FK529605
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: CAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|298177502|gb|HO023635.1|HO023635
genomic: CAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|208209620|gb|GE004339.1|GE004339
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|19053330|gb|BM731997.1|BM731997
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
acattcgctgcgtattgatctgcaattgtctttttttgttttggggattcggcagGTACATGGACAAGAAGCTTCAGA
tattgat putative branch site (score: 3)
aattgtcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtttctctcactttccacttcaattttattttaattttagttttatttttaattttccatgttcttctacattcgctgcgtattgatctgcaattgtctttttttgttttggggattcggcagGTACATGGACAAGAAGCTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC