Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattattgctaaaccaatcagtgtcttgagcattatgtttgatcaaatgaataatcatttttcttagaagtaatattaatatttgatattcctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG

Basic information

species Glycine max
transcript GLYMA03G34700.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34700.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 1
---aattattgctaa--accaatcagtgtcttgagcattatgtttgatcaaatgaataatcatttttcttagaagtaatattaatatttgatattcctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG
   | || |  ||     ||  ||| |    |      | |   | ||||||  || ||  || | |||     | ||| | | || || |||||  | | |||| |||||||| || || ||||||||||| ||||| ||||| || || || |||||||||||| |   |||||| |||
tatacttgtaactctttgcccttcattaatatatcttgttttacttatcaaaaaaaaaaatatatgtct-----gcaatctcattacttaatattggtctttcagGACTGAACTCTGTCGCTTCAGTGGTGCAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG

upper sequence: GLYMA03G34700.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 1
----aattattgctaaaccaatcagtgtcttgagcattatgtttgatcaaatgaataatcatttttcttagaagtaatattaatatttga-tattcctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG
       | ||| | ||  ||  | |   || || |||| || ||   |  |  ||  |   | ||     ||| |||  |||||| | | | |   ||| ||||||||||||| ||||||||||||||||||||||| ||||| || || || |||||||||||||||   |||||||||
tgctttcttttgtttaaataa--aattaatttagaatta-gtgtgtgtaccttcattctggatgttaaatcaaggaat--taatatctaagtgtcattgtctcagAACTGAACTCTGCCGATTCAGTGGTGCCAAGATATACCCTGGGAAAGGAATCAGATTTGTTCGTTCAGATTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193485413|gb|FK452524.1|FK452524
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193472549|gb|FK434934.1|FK434934
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208129820|gb|GD933208.1|GD933208
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208060957|gb|GD857537.1|GD857537
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298195186|gb|HO043714.1|HO043714
EST:     GTTTATACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193649454|gb|FK597921.1|FK597921
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|192294484|gb|FG987413.1|FG987413
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGACTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298185863|gb|HO031024.1|HO031024
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|192330294|gb|FK019859.1|FK019859
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|4289428|gb|AI441474.1|AI441474
EST:     GCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208287199|gb|GE089273.1|GE089273
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193619543|gb|FK572153.1|FK572153
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298163305|gb|HO012038.1|HO012038
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298195882|gb|HO044273.1|HO044273
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298181652|gb|HO025827.1|HO025827
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCGGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|5126965|gb|AI748701.1|AI748701
EST:     TTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: TTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298196757|gb|HO041500.1|HO041500
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|163923445|gb|EH039711.1|EH039711
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|9203789|gb|BE330013.1|BE330013
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|209725094|gb|BW663047.1|BW663047
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|207755317|gb|GD729912.1|GD729912
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193359885|gb|FK324221.1|FK324221
EST:     TTTACTACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGAATCTACCCCGGAAAGGGCA
genomic: TTTAC-ACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAG-ATCTACCCCGGAAAGGGCA
EST: gi|298176841|gb|HO023314.1|HO023314
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|14990677|gb|BI316350.1|BI316350
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|151408760|gb|EV278568.1|EV278568
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGTCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|207694714|gb|GD676573.1|GD676573
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208145762|gb|GD943135.1|GD943135
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193401883|gb|FK367088.1|FK367088
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|207750824|gb|GD722999.1|GD722999
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193682324|gb|FK624136.1|FK624136
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298185788|gb|HO028099.1|HO028099
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208116457|gb|GD914516.1|GD914516
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208030119|gb|GD831601.1|GD831601
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208261973|gb|GE058340.1|GE058340
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298191584|gb|HO039063.1|HO039063
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCTAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|7147074|gb|AW508996.1|AW508996
EST:     GAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|41145399|gb|CK605610.1|CK605610
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193430097|gb|FK395983.1|FK395983
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTTTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298192677|gb|HO033111.1|HO033111
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193423764|gb|FK388535.1|FK388535
EST:     TTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: -TTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193318158|gb|FK286240.1|FK286240
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298188287|gb|HO034980.1|HO034980
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAG                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|207712421|gb|GD693829.1|GD693829
EST:     CCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: CCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193708229|gb|FK642479.1|FK642479
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|13481763|gb|BG511106.1|BG511106
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCT-AA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193690956|gb|FK627071.1|FK627071
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|207777264|gb|GD750445.1|GD750445
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298194362|gb|HO041010.1|HO041010
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298185667|gb|HO030880.1|HO030880
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298184248|gb|HO029461.1|HO029461
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298190439|gb|HO032560.1|HO032560
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGGAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|207779102|gb|GD750716.1|GD750716
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCACAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193319023|gb|FK285915.1|FK285915
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTG
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTG
EST: gi|209718579|gb|BW674718.1|BW674718
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|21676137|gb|BQ628488.1|BQ628488
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193723654|gb|FK659560.1|FK659560
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298168643|gb|HO009573.1|HO009573
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGATGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|209718214|gb|BW657833.1|BW657833
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193378405|gb|FK343752.1|FK343752
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|192297539|gb|FG989890.1|FG989890
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298169990|gb|HO018614.1|HO018614
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTGTGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298168298|gb|HO014473.1|HO014473
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298175854|gb|HO015259.1|HO015259
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|254326840|gb|GR836449.1|GR836449
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193404986|gb|FK374253.1|FK374253
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|38193078|gb|CF922284.1|CF922284
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193419796|gb|FK382424.1|FK382424
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAGGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193541727|gb|FK497099.1|FK497099
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|193405172|gb|FK372563.1|FK372563
EST:     GTTTANACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCCGGAAAGGGCA
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTA-CCCCGGAAAGGGCA
EST: gi|298195566|gb|HO043957.1|HO043957
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208245666|gb|GE047030.1|GE047030
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|15813205|gb|BI785480.1|BI785480
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|208296532|gb|GE089688.1|GE089688
EST:     GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
EST: gi|298171001|gb|HO016033.1|HO016033
EST:     GTTTACACCGAGCAGCGGCACCTCCCTCCCGCAGTAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCGACACCTCCCTCCCGCAGTAGCCATGGTTCTCAAgtacgtatcc ... cctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaataatcatttttcttagaagtaatattaatatttgatattcctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG
                                         tattcct  CT-rich tract
     ataatcatttttctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattattgctaaaccaatcagtgtcttgagcattatgtttgatcaaatgaataatcatttttcttagaagtaatattaatatttgatattcctgtatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG

- - - - - - -ccaatca
- - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - atgtttg