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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcttatatgaatttccgattagatagtgattaatagcatatatgaatttctgatttggtagagattaatagcatatatgaatttccgattgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCATCGGTGGTGAGTTCACCTACTTCATCGAGGCCTGTTACA

Basic information

species Glycine max
transcript GLYMA03G34540.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997616|gb|CF809205.1|CF809205
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|213610992|gb|DB970919.1|DB970919
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|10848192|gb|BF070735.1|BF070735
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|151395409|gb|EV265286.1|EV265286
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|5678132|gb|AI939262.1|AI939262
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|298167079|gb|HO010518.1|HO010518
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|27427318|gb|CA938838.1|CA938838
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|192328158|gb|FK020419.1|FK020419
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattattc ... ttgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttctgatttggtagagattaatagcatatatgaatttccgattgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCATCGGTGGTGAGTTCACCTACTTCATCGAGGCCTGTTACA
                   gattaat  putative branch site (score: 3)
                    attaatagcatatatg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagcttatatgaatttccgattagatagtgattaatagcatatatgaatttctgatttggtagagattaatagcatatatgaatttccgattgtgcgcagGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCATCGGTGGTGAGTTCACCTACTTCATCGAGGCCTGTTACA

- - - - - - - - - - - -gatagtg
- - - - - - - - - - - - - - - - - - -gcatata