1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cggggaattctataatgtttttcctgttcttactgtttattgtgacaaaatggaattgtcttagcatatgagtgaattgttggtttgattgaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCTTCGTCATCGTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCGGCAG
species | Glycine max |
transcript | GLYMA03G33740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAG GTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCTEST: gi|209728175|gb|BW651610.1|BW651610
genomic: CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttccctta ... gaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT
EST: CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAG GTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT
genomic: CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttccctta ... gaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT
caaaatggaattgtcttagcatatgagtgaattgttggtttgattgaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCTTCGTCATCGTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCGGCAG
gtttgat putative branch site (score: 5)
aattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggggaattctataatgtttttcctgttcttactgtttattgtgacaaaatggaattgtcttagcatatgagtgaattgttggtttgattgaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCTTCGTCATCGTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCGGCAG
- - - - - - - - - - -tcctgtt
- - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt