1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcacacttcccttcactttttttttcaaattcattactaaatgaggaaatttgtgccctaattcgtgagaattatcgattttttttattcatctcccaaacatgtgtgatagtatgtggagtcaattttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCAATGCCGAGATTCGTCGAACCAAGGCTAGGTTGTTGGAGGAGGTTCCCA
species | Glycine max |
transcript | GLYMA03G33680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|193305878|gb|FK269233.1|FK269233
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|7588839|gb|AW704626.1|AW704626
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|192310641|gb|FK001065.1|FK001065
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|151393190|gb|EV263065.1|EV263065
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|18039839|gb|BM308133.1|BM308133
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|151404741|gb|EV274555.1|EV274555
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|192294446|gb|FG987375.1|FG987375
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCEST: gi|7589461|gb|AW705234.1|AW705234
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
ttttttattcatctcccaaacatgtgtgatagtatgtggagtcaattttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCAATGCCGAGATTCGTCGAACCAAGGCTAGGTTGTTGGAGGAGGTTCCCA
tcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcacacttcccttcactttttttttcaaattcattactaaatgaggaaatttgtgccctaattcgtgagaattatcgattttttttattcatctcccaaacatgtgtgatagtatgtggagtcaattttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATCAATGCCGAGATTCGTCGAACCAAGGCTAGGTTGTTGGAGGAGGTTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG