1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttttaagaagtagcatagtttttaactaaaagcaaattataagatgatagtatatttatctcttttgtttgtgattttcaatttttggtctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGAGAATCGG
species | Glycine max |
transcript | GLYMA03G33390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCNNNCTTNNNTCCCAG CTATCAGAAATTGTTAATCAAGGNNNATTGGTGTCAGATGAAATCATCATAEST: gi|298173011|gb|HO020010.1|HO020010
genomic: CGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAEST: gi|8285894|gb|BE023453.1|BE023453
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAGATTGGTGTCAGATGAAATCCTCATAEST: gi|254324726|gb|GR834151.1|GR834151
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAEST: gi|120530929|gb|EH259062.1|EH259062
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAEST: gi|209697267|gb|BW675478.1|BW675478
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAEST: gi|15663261|gb|BI700632.1|BI700632
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAEST: gi|8285320|gb|BE022879.1|BE022879
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAEST: gi|254315931|gb|GR825740.1|GR825740
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
EST: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
genomic: GCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatccc ... ctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATA
tgatagtatatttatctcttttgtttgtgattttcaatttttggtctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGAGAATCGG
tttttggtcttttt CT-rich tract
tatatttatctctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttaagaagtagcatagtttttaactaaaagcaaattataagatgatagtatatttatctcttttgtttgtgattttcaatttttggtctttttacagCTATCAGAAATTGTTAATCAAGGAAAATTGGTGTCAGATGAAATCATCATAAGTTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGAGAATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA