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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaattttttattcgttattgttatatgctcaaatgatacgattaataaggggtctctttgtctaattaaattttgaaatttctgttgtatgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGGTTGTCTTCGAGGACTCGTTCCCGTGACCTGG

Basic information

species Glycine max
transcript GLYMA03G33270.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193711520|gb|FK642985.1|FK642985
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|192299576|gb|FG989987.1|FG989987
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|193440148|gb|FK408535.1|FK408535
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaggggtctctttgtctaattaaattttgaaatttctgttgtatgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGGTTGTCTTCGAGGACTCGTTCCCGTGACCTGG
               gtctaat  putative branch site (score: 3)
                  taattaaattttgaaa  TA-rich tract