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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaattttttattcgttattgttatatgctcaaatgatacgattaataaggggtctctttgtctaattaaattttgaaatttctgttgtatgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGGTTGTCTTCGAGGACTCGTTCCCGTGACCTGG

Basic information

species Glycine max
transcript GLYMA03G33270.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193711520|gb|FK642985.1|FK642985
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|192299576|gb|FG989987.1|FG989987
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|192331339|gb|FK023808.1|FK023808
EST:     GATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: GATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|151411040|gb|EV280851.1|EV280851
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAGTCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGGTGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|120529026|gb|EH257160.1|EH257160
EST:     CACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: CACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|254332768|gb|GR846599.1|GR846599
EST:     ATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: ATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|120534327|gb|EH262460.1|EH262460
EST:     TCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|192320086|gb|FK014170.1|FK014170
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|192299767|gb|FG993317.1|FG993317
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|192328414|gb|FK020125.1|FK020125
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|7146149|gb|AW508071.1|AW508071
EST:     TTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|7692902|gb|AW761001.1|AW761001
EST:     CACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: CACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|151398264|gb|EV268142.1|EV268142
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|193440148|gb|FK408535.1|FK408535
EST:     TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: TACCGATCCACTTTGAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
EST: gi|16347699|gb|BI973294.1|BI973294
EST:     GAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAG                         AGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC
genomic: GAAAGGGTTCACGAAGAAACACCAATCCGCTCCGAGgttgtaactc ... tgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaggggtctctttgtctaattaaattttgaaatttctgttgtatgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGGTTGTCTTCGAGGACTCGTTCCCGTGACCTGG
               gtctaat  putative branch site (score: 3)
                  taattaaattttgaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcaattttttattcgttattgttatatgctcaaatgatacgattaataaggggtctctttgtctaattaaattttgaaatttctgttgtatgttttgcagAGCTAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGGTTGTCTTCGAGGACTCGTTCCCGTGACCTGG

- - - - - - - - - - - - tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg