1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtgttccgatttgttatttgtttcattcacagagaagggatctctgggttacctttttcttagttaattacgcaatttgagttgttgttgattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGGCACTTATCTTCGAGGACTCGTTCCCGGGATCTGG
species | Glycine max |
transcript | GLYMA03G33260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|298170069|gb|HO018693.1|HO018693
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|213589600|gb|DB965816.1|DB965816
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GGTCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|193404955|gb|FK374250.1|FK374250
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAG-AAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAGCGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|151403736|gb|EV273546.1|EV273546
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|192324223|gb|FK017954.1|FK017954
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAACACCEST: gi|213597756|gb|DB960313.1|DB960313
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GGTCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|193406622|gb|FK375581.1|FK375581
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: ATTCCACTTGAAAGGGTTAGGTTTCGGGAG-AAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|193441307|gb|FK406012.1|FK406012
genomic: A-TCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATAEST: gi|193478543|gb|FK447570.1|FK447570
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATA
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAG-AAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|298193736|gb|HO040384.1|HO040384
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|192334590|gb|FK025179.1|FK025179
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
tgggttacctttttcttagttaattacgcaatttgagttgttgttgattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGGCACTTATCTTCGAGGACTCGTTCCCGGGATCTGG
tgttgat putative branch site (score: 4)
tttttcttagttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgttccgatttgttatttgtttcattcacagagaagggatctctgggttacctttttcttagttaattacgcaatttgagttgttgttgattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGGCACTTATCTTCGAGGACTCGTTCCCGGGATCTGG
tgtgttc
- - - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg