Sequence
atgc intronic sequence ATGC exonic sequence...ttttgtttccttttggtggcatacgtatataagttctgatgaagtgaagggtatatttgcatacatataatataattataatcataatacatatgtgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCT
Basic information
species | Glycine max |
transcript | GLYMA03G33110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33110.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G02580.2 (Arabidopsis thaliana), 3'ss of exon 1
-------------------ttttgtttccttttggtggcatacgtatataagttctgatgaagtgaagggtatatttgcatacatataatata------attataatcata-atacatatg---tgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCT
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gtacgactttatcaaactctttttttttttttccgtttcttgtcaaatcaatctctgatc--ttgatcgatattttatcacttaaccgatgctgatcatatcataatcatgtgtatatattggttgcagGTGCATCATTTGATAGAAGAATGTATAGTATTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATTAAGCCTATCATCACTT
upper sequence: GLYMA03G33110.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0040g02650.t01 (Vitis vinifera), 3'ss of exon 1
----ttttgtttccttttggtggcatacgtat--ataagttctgatgaagtgaagggtatatttgcatacatataatataattataatcataatacatatgtgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCT
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gtgagcatacctctctcttattccagatcttttcatataactggcctgggttttgaatgtagtcg-atgcgatgaagattatgaata-cacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22932974|gb|BU550113.1|BU550113EST: TTAAGAGCCACATGGAAGACTCTTCTTCCTCTGCTGCNNATATCCGCCTG GTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAG
genomic: TTAAGAGCCACATGGAAGACTCTTCTTCCTCTGCTGCTTATATCCGCCTGgtgagtttta ... atatgtgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagggtatatttgcatacatataatataattataatcataatacatatgtgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCT
tatatttgcatacata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttgtttccttttggtggcatacgtatataagttctgatgaagtgaagggtatatttgcatacatataatataattataatcataatacatatgtgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- -tgtttcc
- - - - - - ttggtgg
- - - - - - - - - - - - - - - - - tctgatg
- - - - - - - - - - - - - - - - - - - - - -gtgaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataca