1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttctcaccttcatctcttctcttctcctctattttgctgtcacacacacactcacaagcattaacatctctcacacgctttatttgccttttcgagatctgtgcttgaaccttcacttgtgtttccttccttctgcagACGAGCTTCACCTTGCGCCG
species | Glycine max |
transcript | GLYMA03G33000.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCTTCTTTCCTTTACACAGAACAATAGCAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|193353901|gb|FK321657.1|FK321657
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: ACAGAACAATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|193656797|gb|FK606713.1|FK606713
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: GTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|27446381|gb|CA953504.1|CA953504
genomic: GTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: CAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|298199436|gb|HO042799.1|HO042799
genomic: CAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: ACAGAACAACAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCTGEST: gi|192296495|gb|FG989111.1|FG989111
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: ACACAGAACAATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|8827754|gb|BE211484.1|BE211484
genomic: ACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: GAACAATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|7588509|gb|AW704365.1|AW704365
genomic: GAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|9986811|gb|BE660919.1|BE660919
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: AATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|7588510|gb|AW704234.1|AW704234
genomic: AATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCGEST: gi|151404690|gb|EV274504.1|EV274504
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG ACGAGCTTCACCTTGCGCCG
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
ttgccttttcgagatctgtgcttgaaccttcacttgtgtttccttccttctgcagACGAGCTTCACCTTGCGCCG
ccttcacttgtgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcaccttcatctcttctcttctcctctattttgctgtcacacacacactcacaagcattaacatctctcacacgctttatttgccttttcgagatctgtgcttgaaccttcacttgtgtttccttccttctgcagACGAGCTTCACCTTGCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT