1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcttatgcatctcaactctattgttgctactatgtgattatgaaattgttagttgtgcatttgatggttatccagtcttagataatttttttgtcttcagAATGATTTATAGCATAGACTTGAATTAGAGAAGGAACACAAGAAATCAACATCCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATG
species | Glycine max |
transcript | GLYMA03G32550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgttagttgtgcatttgatggttatccagtcttagataatttttttgtcttcagAATGATTTATAGCATAGACTTGAATTAGAGAAGGAACACAAGAAATCAACATCCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATG
atttgat putative branch site (score: 5)
tttttttgtcttc putative PPT
tcttagataatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttatgcatctcaactctattgttgctactatgtgattatgaaattgttagttgtgcatttgatggttatccagtcttagataatttttttgtcttcagAATGATTTATAGCATAGACTTGAATTAGAGAAGGAACACAAGAAATCAACATCCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -tatgcat
- - - - - - caactct
- - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtt