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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgctcacaactttccgaaattccttcgcatctgattttttgttttgtgcactttcttcgcttctatagtttccgtgttcatctatttgaatgatccgttaattaattgctataattttgttcctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG

Basic information

species Glycine max
transcript GLYMA03G31790.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481834|gb|AW201105.1|AW201105
EST:     CACCTTGGCGGAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAG                         AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
genomic: CACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAGgttcgctcac ... ctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
EST: gi|22929412|gb|BU546551.1|BU546551
EST:     TGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAG                         AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
genomic: TGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAGgttcgctcac ... ctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
EST: gi|7693452|gb|AW761544.1|AW761544
EST:     ATCAAAGTTCCGCTTCCCTCCGCAG                         AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
genomic: ATCAAAGTTCCGCTTCCCTCCGCAGgttcgctcac ... ctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
EST: gi|7286192|gb|AW598679.1|AW598679
EST:     CACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAG                         AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
genomic: CACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAGgttcgctcac ... ctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
EST: gi|17963404|gb|BM270153.1|BM270153
EST:     CACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAG                         AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
genomic: CACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAGgttcgctcac ... ctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatctatttgaatgatccgttaattaattgctataattttgttcctggaaacagAGACTGGACGATCTCGCGAGCCATGAATGCTAGACG
                      aattaat  putative branch site (score: 3)
                                     ttttgttcct  putative PPT
                    ttaattaattgctata  TA-rich tract