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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttgaatctcaacaacagaaaacctcaatttttttattatttcattttttgaagaatgattatagaaatctcttattatattggtcatggttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG

Basic information

species Glycine max
transcript GLYMA03G30800.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192383|gb|HO036465.1|HO036465
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCACGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|213611742|gb|DB958864.1|DB958864
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|298165676|gb|HO008647.1|HO008647
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|298175980|gb|HO015385.1|HO015385
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTGCAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|16345172|gb|BI970767.1|BI970767
EST:     CTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: CTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|298194623|gb|HO043095.1|HO043095
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGGCGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|193553968|gb|FK512509.1|FK512509
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|298178511|gb|HO024246.1|HO024246
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATTCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|298181386|gb|HO022825.1|HO022825
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|10237987|gb|BE806875.1|BE806875
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCA
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCA
EST: gi|23734566|gb|BU765519.1|BU765519
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|18039234|gb|BM307528.1|BM307528
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
EST: gi|17400959|gb|BM177741.1|BM177741
EST:     GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACATTGGGAAGGTTCTT
genomic: GTGCTTCGCTATCGGTCTCGGAAAAATCCATCCATGAATTCATGGTCAAGgtatacttga ... gttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgaagaatgattatagaaatctcttattatattggtcatggttgacacagGATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG
                                            ggttgac  putative branch site (score: 4)
          aatgattatagaaatc  TA-rich tract