1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttctcttcccccctattttggtgtaaagaatatcaaaatttgactataatagcatctactatgtaagttcttatgcattgaccctttaactgtataacagATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAA
species | Glycine max |
transcript | GLYMA03G30250.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATATGCATACCAACAAGACACGCTTTTTTCTTCAATCTCCATAGCGGGGG ATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGA
genomic: ATATGCATACCAACAAGACACGCTTTTTTCTTCAATCTCCATAGCGGGGGgtaatttccg ... tgtataacagATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGA
ataatagcatctactatgtaagttcttatgcattgaccctttaactgtataacagATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAA
ctttaac putative branch site (score: 3)
tatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcttcccccctattttggtgtaaagaatatcaaaatttgactataatagcatctactatgtaagttcttatgcattgaccctttaactgtataacagATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -ttccccc
- - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat