1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatagccacgttctctcttccctctttcatccccggtgataagaacaagcacccaccgtttaacgctaattatatgtgtttttggtttttttttttttttttgcagcagCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG
species | Glycine max |
transcript | GLYMA03G30110.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACACTCCCATACACACACGTAGTCTCGCACACATTCCTTCATTCCGCAGCAGEST: gi|193642633|gb|FK593331.1|FK593331
genomic: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATT-C-C-GCAGgtatagccac ... tttgcagc
EST: TTCCTTCATTCCGCAGCAGEST: gi|208103976|gb|GD902651.1|GD902651
genomic: TTCCTTCATT-C-C-GCAGgtatagccac ... tttgcagc
EST: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAGCAGEST: gi|254315473|gb|GR825282.1|GR825282
genomic: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATT-C-C-GCAGgtatagccac ... tttgcagc
EST: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAGCAG
genomic: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATT-C-C-GCAGgtatagccac ... tttgcagc
accgtttaacgctaattatatgtgtttttggtttttttttttttttttgcagcagCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG
cgctaat putative branch site (score: 3)
tgtgtttttggttttt putative PPT
taattatatgtgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagccacgttctctcttccctctttcatccccggtgataagaacaagcacccaccgtttaacgctaattatatgtgtttttggtttttttttttttttttgcagcagCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT