Sequence
atgc intronic sequence ATGC exonic sequence...atgtaattgatattcaaatttaagaattattgttctagttatattattataagttgaatatattatctacttgaggagttttagacttaactttttgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 2
--------atgtaattgatattcaaatttaagaattattgttctagttatattattataagttgaata--tattatctacttgaggagttttagacttaactttt-tgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
| ||| || || ||| | ||| | ||| || || | | || || || | | |||| || | ||| ||||| | | ||| || || ||||||||||||||| | |||||| |||||||||| ||||| | | | ||||| || ||||| |||| |||||||| || || | | |||
gtatccttctttaaatgcctttatggttt--gttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACGGTAAATTTTACAATGGAGATTCATATATAGTTCTCCAG
upper sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g24220.3 (Oryza sativa), 3'ss of exon 1
--------atgtaattgatattcaaatttaagaattattgttctagttatattattataagttgaata--tattatctacttgaggagttttagacttaactttt-tgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
| ||| || || ||| | ||| | ||| || || | | || || || | | |||| || | ||| ||||| | | ||| || || ||||||||||||||| | |||||| |||||||||| ||||| | | | ||||| |
gtatccttctttaaatgcctttatggttt--gttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG--------------------------------------
upper sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 1
---atgtaattgatattcaaatt-taagaattattgttctagttatattattataagttgaatatattatctacttgaggagttttagacttaactttttgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
||| | || | | ||| | | ||||| | || | |||| | || | | | | | ||| ||| || | ||||||| | |||||| || || ||||||||||| |||||| | |||||||||||||| ||||| | | |||||||| |||||||||| || || |||||||| || |||||
tgcatgcatgtgttcctgttattgttctagatattgaacaagctg--ctattgtc--ttaattgctatttttgcttctggaattgtgaacttaacatcttgtagTGGCACCGAAATATGGAGAATTGAGAACTTTCAGCCAGTTCCTTTGCCAAAGTCCGATTATGGTAAATTCTACACAGGGGACTCTTACATTGTCCTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attataagttgaatatattatctacttgaggagttttagacttaactttttgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
agacttaac putative branch site
ctttttgt CT-rich tract
aagttgaatatattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtaattgatattcaaatttaagaattattgttctagttatattattataagttgaatatattatctacttgaggagttttagacttaactttttgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT