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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctaccagtcattcacataggaaaaaaaaatgggagaagaaaagtgaaaaccatttggtttcattgttttcaatcattttctgatcaaccttctatttgtcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG

Basic information

species Glycine max
transcript GLYMA03G27760.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596061|gb|DB966308.1|DB966308
EST:     CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAG                         GAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
genomic: CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGgtacctacca ... tcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
EST: gi|213597584|gb|DB962550.1|DB962550
EST:     CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAG                         GAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
genomic: CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGgtacctacca ... tcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
EST: gi|23726100|gb|BU761030.1|BU761030
EST:     CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAG                         GAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
genomic: CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGgtacctacca ... tcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
EST: gi|151401707|gb|EV271520.1|EV271520
EST:     CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAG                         GAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
genomic: CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGgtacctacca ... tcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
EST: gi|213617303|gb|DB972913.1|DB972913
EST:     CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAG                         GAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
genomic: CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGgtacctacca ... tcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
EST: gi|254320171|gb|GR829359.1|GR829359
EST:     CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAG                         GAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT
genomic: CACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGgtacctacca ... tcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttcattgttttcaatcattttctgatcaaccttctatttgtcattggcagGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG
                        ttctgat  putative branch site (score: 3)
 ttttcaatcatttt  TA-rich tract