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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatggatcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG

Basic information

species Glycine max
transcript GLYMA03G27620.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 7
--------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatg------gatcctactctt-----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
           | | |  ||  || ||||  ||   | |||| |  |   || || || ||||  |||||       |||  | ||  |     ||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   ||||||||| |||||||
gtatggccacttgaaacacaagttcacattcatccta-taca-atgcattcttgtgtg-atggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatggatcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
                       ||||||||| |  || | |   ||  || |       |   | |   | |  | | |     |      | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   |||||| ||||||||||
gtatggccacttgaaacaaaagttcacattca-tcctataca---atgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 4
--------gtatcacattcagttttacataaat---ata-aatacacaaactagctagtatgtatggtttaaatgg----atcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
         | ||| |  ||  || ||||  ||   ||| ||| ||       |  |     |     ||| |||      |      | |||||||  ||||  | ||||| ||||  ||||||||||||||||||||||||||||   |  | || ||   |||||||||| ||||||
gtatggccatttcaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 3'ss of exon 1
--------gtatcacattcagttttacataaat---ata-aatacacaaactagctagtatgtatggtttaaatggatcctactct--tgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
         | | | |  ||  || ||||  ||   ||| ||| ||       |  |     |     ||| |||  | || ||    |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   |||||||||||||||||
gtatggccatttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01290.t01 (Vitis vinifera), 3'ss of exon 4
--------gtatcacattcagttttacataaatataaatacacaaactag-ctagtatgtatggtttaa------atggatcctactctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG-----
         | | | |  ||  || | ||  ||     ||  |||  ||  || || |||  |  | ||      ||| |      ||||    | || || ||||  ||||||| | ||  |||||||||||||||||||||||||||||| |  | ||||| |||||||||||||||||||     
gtatggacattttaaacacaagttcatattcatcc---tatgcaatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 5
--------------------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatggatcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
                       ||||||||| |  || | || |  |           | |   | || | |   | | || | | || | | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | |||||   |||||||||||||||||
gtatggccacttgaaacacaagttcacattca-tcctatacaa-tgcattcttgtgtgatggactgaatct-tatatgatattgcttcttc-cgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 4
--------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaa------atggatcctactctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
         | | | |  ||  || | ||  ||   |   ||   | |  || || |||  |  | ||      ||| |      ||||    | || || ||||  ||||||| ||||  |||||||||||||||||||||||||||||| |  | ||||| |||||||||||||||||||
gtatggccattttaaacacaaattcatattcatcctatgccatttatt--cttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 4
--------gtatcacattcagttttacataaat---ata-aataca--caaactagctagtatgtatggtttaaatggatcctactct--tgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
           | | |  ||  || ||||  ||   ||| ||| ||  |      | | |  || ||  | ||      |||| ||    |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | |||||   |||||||||||||||||
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaatacacaaactagctagtatgtatggtttaaatggatcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG
                                         tcctactctt  CT-rich tract
                               tttaaat  TA-rich tract