1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtttatcccattagggccttaaggtttacatgattaggcaacaaattttgggaatggaagtttttgcaggtactaaaagggttttacttttttggggcagCGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAATTAACTCATGGATGCACAAACCAAAAATCAAAGGATTACAT
species | Glycine max |
transcript | GLYMA03G26680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGAAGCTATGTTGTTGGCGTCTTTTCGTT CGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAATEST: gi|213589871|gb|DB959454.1|DB959454
genomic: TAGAAGCTATGTTGTTGGCGTCTTTTCGTTgtaagtcttt ... tttggggcagCGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAAT
EST: GTTGGCGTCTTTTCGTT CGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAAT
genomic: GTTGGCGTCTTTTCGTTgtaagtcttt ... tttggggcagCGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAAT
ttttgggaatggaagtttttgcaggtactaaaagggttttacttttttggggcagCGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAATTAACTCATGGATGCACAAACCAAAAATCAAAGGATTACAT
tactaaa putative branch site (score: 1)
ttttactttttt putative PPT
ttttactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatcccattagggccttaaggtttacatgattaggcaacaaattttgggaatggaagtttttgcaggtactaaaagggttttacttttttggggcagCGAACTTCCCTTGTGCTGTACAAGGAACTGTATTTTGTCAAAGGAAGCAATTAACTCATGGATGCACAAACCAAAAATCAAAGGATTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - -gccttaa
- - - - - - - - - - - - - tacatga
- - - - - - - - - - - - - - - - - - -gcaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaggt