Sequence
atgc intronic sequence ATGC exonic sequence...atatataaaataatgtacttgctttcatttttttatagttaaaaaagtctgtttgcagatcctataattgtgttattctcatttatcttttctctgtcagGCTGTACATGAAGGAAGAATTTATCAACTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGTCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
Basic information
species | Glycine max |
transcript | GLYMA03G26580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G26580.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 2
atatataaaataatgtacttgctttcatttttttatagttaaaaaa--gtctgtttgcagatcctataattgtgttattctcatttatctt-ttctctgtcagGCTGTACATGAAGGAAGAATTTATCAACTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGTCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
|| || |||||||| || | |||| || | | | || | | | || || ||| || | | || || | | |||| ||||||||||||| | || ||||| ||||| |||| ||||| ||||| || ||||| ||| | || ||||| || ||||||||||||||||||||||
---tagaatgaaatgtactattgttgaggttttggattttgacttcttgctgatatggatagcttacaagcacattacaatcttctcctttattttttttcagACTGTACATGAAGGTCGCATATATCAGTTGAAGCTGTTCTGTGACAAAGATTATCCAGAGAAGCCACCAAGTGTCCGTTTTCATTCACGGATCAACATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtctgtttgcagatcctataattgtgttattctcatttatcttttctctgtcagGCTGTACATGAAGGAAGAATTTATCAACTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGTCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
ttattctcatttatct CT-rich tract
tataattgtgttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatataaaataatgtacttgctttcatttttttatagttaaaaaagtctgtttgcagatcctataattgtgttattctcatttatcttttctctgtcagGCTGTACATGAAGGAAGAATTTATCAACTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGTCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
- - - aaaataa
- - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc