1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatcggataatgcactagattgttaagtttagctattagatatattacataagttgaagttttgtgattggtatttagtttattgttttattttgttcagCTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCACAACTTCTAAGATACAGCAGCTGCAAAAGGCATTTGCTGAACTTGAAAGT
species | Glycine max |
transcript | GLYMA03G23740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAACTTTCCTTCCTTGGGATCATTCTG CTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCACEST: gi|254340096|gb|GR858221.1|GR858221
genomic: CCAACTTTCCTTCCTTGGGATCATTCTGgtaaactcct ... ttttgttcagCTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCAC
EST: CCAACTTTCCTTCCTTGGGATCATTCTG CTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCAC
genomic: CCAACTTTCCTTCCTTGGGATCATTCTGgtaaactcct ... ttttgttcagCTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCAC
tacataagttgaagttttgtgattggtatttagtttattgttttattttgttcagCTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCACAACTTCTAAGATACAGCAGCTGCAAAAGGCATTTGCTGAACTTGAAAGT
ttttatttt CT-rich tract
attggtatttagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcggataatgcactagattgttaagtttagctattagatatattacataagttgaagttttgtgattggtatttagtttattgttttattttgttcagCTTCTTTGCTATGGAAGACTCAGATTCAGTTGCTACGCTGATAGATTCCACAACTTCTAAGATACAGCAGCTGCAAAAGGCATTTGCTGAACTTGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg