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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcttcttcttcttcttcttcttctcccttttcggctaccgagaaattgagtgattgattaaccctttgttttttttttttgggtttgaagGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA

Basic information

species Glycine max
transcript GLYMA03G22210.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22210.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ37662 (Selaginella moellendorffii), 3'ss of exon 1
gttctcttcttcttcttcttcttcttctcccttttcggctaccgagaaattgagtgattgattaaccctttgttttttttttttgggtttga---agGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA
                                  |  ||| |   |   ||||  |    ||    ||  ||  |   | ||| | || ||    |||||||||||||||||||  | ||||| || || ||||| ||||||||||||||| |||  |       
---------------------------------gtacgctgcgctgctcttgatcgggaaatcgctccagtggatcggtatttcgcgtgtgttccagGCGATTACGCTGTGCCCGGACGTTCCAGTCTACTGGACCAATCGCGCGCTGTGCTATCAGAGAAAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325145|gb|FK017531.1|FK017531
EST:     CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAG                         GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
genomic: CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGgttctcttct ... gggtttgaagGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
EST: gi|151405134|gb|EV274948.1|EV274948
EST:     CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAG                         GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
genomic: CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGgttctcttct ... gggtttgaagGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
EST: gi|27426134|gb|CA937654.1|CA937654
EST:     CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAG                         GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
genomic: CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGgttctcttct ... gggtttgaagGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
EST: gi|151408132|gb|EV277940.1|EV277940
EST:     CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAG                         GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG
genomic: CTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGgttctcttct ... gggtttgaagGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccgagaaattgagtgattgattaaccctttgttttttttttttgggtttgaagGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA
                    gattaac  putative branch site (score: 2)
                          ccctttgttttttttt  CT-rich tract
                             tttgtttttttttttt  TA-rich tract