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...gagaagggaaccaaacaggtcctaagtgtttgtagaactgtatataaattttgtgcttttaattactcttgatatcttttccctgttatggcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGATGGCAAACAGAAGTTAGTTCCAGCATCTATGCAAATCCCTTGATTGCT
species | Glycine max |
transcript | GLYMA03G14690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAAT AGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGEST: gi|298176016|gb|HO015421.1|HO015421
genomic: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAATgtaacactct ... gcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAG
EST: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAAT AGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGEST: gi|213610387|gb|DB958844.1|DB958844
genomic: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAATgtaacactct ... gcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAG
EST: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAAT AGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGEST: gi|209719412|gb|BW674492.1|BW674492
genomic: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAATgtaacactct ... gcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAG
EST: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAAT AGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGEST: gi|254341066|gb|GR854794.1|GR854794
genomic: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAATgtaacactct ... gcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAG
EST: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAAT AGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAG
genomic: ACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAATgtaacactct ... gcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAG
aaattttgtgcttttaattactcttgatatcttttccctgttatggcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGATGGCAAACAGAAGTTAGTTCCAGCATCTATGCAAATCCCTTGATTGCT
ttttaattactctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaagggaaccaaacaggtcctaagtgtttgtagaactgtatataaattttgtgcttttaattactcttgatatcttttccctgttatggcgtggttagAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGATGGCAAACAGAAGTTAGTTCCAGCATCTATGCAAATCCCTTGATTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - ccaaaca
- - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc