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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctcgattaccctcttcgaaatttacgattttgaatcccttcctcgtgccaatttttgttcttttatctgggtttcttctgaccgtttttttccttttcaattttgtacagAAACAAAGTGGTATTGGCCTTATTGGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAA

Basic information

species Glycine max
transcript GLYMA03G07550.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719567|gb|AW307214.1|AW307214
EST:     AACCGCACCCTCAACCGCACCTTCAACAACCCCTCGAGTTCCCCACGCAG                         AAACAAAGTGGTATTGGCCTTATTGGAATTGGCAACACCGTGAGCATTGAC
genomic: AACCGCACCCTCAACCGCACCTTCAACAACCCCTCGAGTTCCCCACGCAGgtttctcgat ... ttttgtacagAAACAAAGTGGTATTGGCCTTATTGGAATTGGCAACACCGTGAGCATTGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttttatctgggtttcttctgaccgtttttttccttttcaattttgtacagAAACAAAGTGGTATTGGCCTTATTGGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAA
                    ttctgac  putative branch site (score: 2)
                          ccgtttttttcctttt  CT-rich tract
                                      ttttcaattttgta  TA-rich tract