1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtagcaactttctgctcctgaaggcttcatctgtggtcttcgtttcgtttttttgatgtggtttttgcttacccacttgaataaagttttgatctttcgttttatttttcttttgggtgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAG
species | Glycine max |
transcript | GLYMA03G07420.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACT AATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAEST: gi|7685524|gb|AW756172.1|AW756172
genomic: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACTgtgagtagca ... tgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGA
EST: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACT AATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAEST: gi|151408709|gb|EV278517.1|EV278517
genomic: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACTgtgagtagca ... tgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGA
EST: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACT AATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAEST: gi|192299906|gb|FG991780.1|FG991780
genomic: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACTgtgagtagca ... tgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGA
EST: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACT AATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGA
genomic: TTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACTgtgagtagca ... tgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGA
ccacttgaataaagttttgatctttcgttttatttttcttttgggtgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAG
ttttgat putative branch site (score: 4)
tgtttttc putative PPT
ttttatttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagcaactttctgctcctgaaggcttcatctgtggtcttcgtttcgtttttttgatgtggtttttgcttacccacttgaataaagttttgatctttcgttttatttttcttttgggtgtttttcagAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG