1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatggactggtgtgagtgatgatgttagttgagtttgttttagaaattgtcctaattttgtctcgtgttatgctagtgtattttcctttgctcttttcagTTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAGAGAAAGTGAGAGAGGGAGATGACATAAGTTCGTTCTGAAGATGGCGTCG
species | Glycine max |
transcript | GLYMA03G07390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACCTCGCCGAGACGAAACCGTAGACGAACAACTCCAACAATTCTCAG TTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAGEST: gi|193466880|gb|FK430733.1|FK430733
genomic: TCGACCTCGCCGACACGAAACCGTAGACGAACAACTCCAACAATTCTCAGgtaaccgctc ... ctcttttcagTTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAG
EST: TCGACCTCGCCGACACGAAACCGTAGACGAACAACTCCAACAATTCTCAG TTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAGEST: gi|193360706|gb|FK326022.1|FK326022
genomic: TCGACCTCGCCGACACGAAACCGTAGACGAACAACTCCAACAATTCTCAGgtaaccgctc ... ctcttttcagTTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAG
EST: TCGACCTCGCCGACACGAAACCGTAGACGAACAACTCCAACAATTCTCAG TTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAG
genomic: TCGACCTCGCCGACACGAAACCGTAGACGAACAACTCCAACAATTCTCAGgtaaccgctc ... ctcttttcagTTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAG
attgtcctaattttgtctcgtgttatgctagtgtattttcctttgctcttttcagTTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAGAGAAAGTGAGAGAGGGAGATGACATAAGTTCGTTCTGAAGATGGCGTCG
tcctaat putative branch site (score: 2)
tgtattttcctttgct putative PPT
taattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggactggtgtgagtgatgatgttagttgagtttgttttagaaattgtcctaattttgtctcgtgttatgctagtgtattttcctttgctcttttcagTTCTTTCTTTTATATTTTGAGAGGAGCACAAGGAATCGTTTGGTACTAAAGAGAAAGTGAGAGAGGGAGATGACATAAGTTCGTTCTGAAGATGGCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -tggtgtg
- - - - - - - - -gatgatg
- - - - - - - - - - - - - - - gagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttatgc